PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504595.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 342aa    MW: 38985.4 Da    PI: 6.5619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05179198120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_016504595.1 179 FSCPLCFKTFNRYNNMQMHM 198
                     89*****************9 PP

2zf-C2H214.69.6e-05263285123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_016504595.1 263 FMCRKCGKAFAVRGDWRTHEKNC 285
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66179206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5179198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61179201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-6245283No hitNo description
Gene3DG3DSA:3.30.160.609.1E-6259283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808263283IPR007087Zinc finger, C2H2
SMARTSM0035549263283IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SYNYILPSTN FQYNEYFQTS PPSPPLKEPL  60
PLLSLSPTIR QIQDQDYSSN ITTMEVDNNS KETKEESFIS NFGDDQEDDE SVSVALQLGL  120
PNPSPELISR ISTTNTIEET NKEDQEVTLA NGYSTTSTLH KGQYWIPTPA QILIGPTQFS  180
CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCFCCAP GCRNNIDHPR  240
AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CTCGSDFKHK  300
RSLKDHIKAF GNGHAAYGID CLEEEDEPAS EIEQDNDHDP ST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780788.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_016504595.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-144ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM1B2851e-173M1B285_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354081e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein